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Computational approach to dendritic spine taxonomy and shape transition analysis
(Peer reviewed; Journal article, 2016)The common approach in morphological analysis of dendritic spines of mammalian neuronal cells is to categorize spines into subpopulations based on whether they are stubby, mushroom, thin, or filopodia shaped. The corresponding ... -
Computational complexity explains neural differences in quantifier verification
(Peer reviewed; Journal article, 2022)Different classes of quantifiers provably require different verification algorithms with different complexity profiles. The algorithm for proportional quantifiers, like ‘most’, is more complex than that for nonproportional ... -
Computational Complexity of the Interleaving Distance
(Journal article; Peer reviewed, 2018)The interleaving distance is arguably the most prominent distance measure in topological data analysis. In this paper, we provide bounds on the computational complexity of determining the interleaving distance in several ... -
Computational Drug Repositioning and Experimental Validation of Ivermectin in Treatment of Gastric Cancer
(Peer reviewed; Journal article, 2021)Objective: The aim of the present study was repositioning of ivermectin in treatment of gastric cancer (GC) by computational prediction based on gene expression profiles of human and mouse model of GC and validations with ... -
Computational Efficiency Assessment of Multi-Period AC Optimal Power Flow including Energy Storage Systems
(Chapter, 2018)In this paper, firstly, a formulation for Multi-Period AC Optimal Power Flow is developed to incorporate intertemporal constraints and, specifically, equations representing energy storage systems. Secondly, a solution ... -
Computational estimation of chemical reaction rates in extracellular vesicle signaling
(Peer reviewed; Journal article, 2023)The rates of chemical reactions involved in cell-to-cell communication can serve as a powerful tool for advanced theranostics and in establishing a molecular communication link between bio-transceivers. Reaction rates are ... -
Computational fluid dynamic simulations of thermochemical conversion of pulverized biomass in a dilute flow using spheroidal approximation
(Peer reviewed; Journal article, 2020)A drag force model for spheroids, referred as the spheroid model, was implemented in OpenFOAM, in order to better predict the thermochemical conversion of pulverized biomass. Our previous work has found that the spheroid ... -
Computational Fluid Dynamics Investigations of Breaking Focused Wave-Induced Loads on a Monopile and the Effect of Breaker Location
(Journal article; Peer reviewed, 2020)The design of new offshore structures requires the calculation of the wave-induced loads. In this regard, the computational fluid dynamics (CFD) methodology has shown to be a reliable tool, in the case of breaking waves ... -
Computational Fluid Dynamics Modeling of Liquid Hydrogen Release and Dispersion in Gas Refuelling Stations
(Peer reviewed; Journal article, 2021) -
Computational Fluid Dynamics Modeling of the Resistivity and Power Density in Reverse Electrodialysis: A Parametric Study
(Peer reviewed; Journal article, 2020)Electrodialysis (ED) and reverse electrodialysis (RED) are enabling technologies which can facilitate renewable energy generation, dynamic energy storage, and hydrogen production from low-grade waste heat. This paper ... -
Computational Fluid Dynamics Reproduction of Nonlinear Loads on a Vertical Column during Extreme Irregular Wave Events
(Journal article; Peer reviewed, 2018)Recently, a method for numerical reproduction of measured irregular wave events has been developed. The measured motion of the wave maker flaps defines the wave kinematics at the boundary of the numerical simulation in ... -
Computational Fluid Dynamics Simulations of Nonlinear Sloshing in a Rotating Rectangular Tank Using the Level Set Method
(Journal article; Peer reviewed, 2018)In this paper, numerical simulations of nonlinear sloshing in rectangular tanks are presented. Model implementations in the open source software reef3d are tested, and the results are compared with experimental data from ... -
Computational Fluid Dynamics Study of a Diffuse Ceiling Ventilation System through Sound-absorbing Ceiling Panels
(Chapter, 2018)The Diffuse Ceiling Ventilation (DCV) is one of the promising concepts to satisfy ventilation and thermal comfort requirements in modern buildings. This solution allows the injection of a high amount of ventilation air at ... -
Computational geometric methods for preferential clustering of particle suspensions
(Peer reviewed; Journal article, 2022)A geometric numerical method for simulating suspensions of spherical and non-spherical particles with Stokes drag is proposed. The method combines divergence-free matrix-valued radial basis function interpolation of the ... -
A computational iterative design method for bend-twist deformation in composite ship propeller blades for thrusters
(Peer reviewed; Journal article, 2023)This study investigates the feasibility of utilising common composite material layup techniques in ship propeller blade design to achieve an automatic pitch adjustment through bending-induced twist deformation. A comprehensive ... -
Computational Modeling of Motile Cilia-Driven Cerebrospinal Flow in the Brain Ventricles of Zebrafish Embryo
(Peer reviewed; Journal article, 2022)Motile cilia are hair-like microscopic structures which generate directional flow to provide fluid transport in various biological processes. Ciliary beating is one of the sources of cerebrospinal flow (CSF) in brain ... -
Computational modeling of the molecular basis for the calcium-dependence of the mannuronan C-5 epimerase AvAlgE6 from Azotobacter vinelandii
(Peer reviewed; Journal article, 2023)The mannuronan C-5 epimerases catalyze epimerization of β-d-mannuronic acid to α-l-guluronic acid in alginate polymers. The seven extracellular Azotobacter vinelandii epimerases (AvAlgE1–7) are calcium-dependent, and calcium ... -
Computational Prediction and Experimental Realization of Earth-Abundant Transparent Conducting Oxide Ga-Doped ZnSb2O6
(Peer reviewed; Journal article, 2022)Transparent conducting oxides have become ubiquitous in modern optoelectronics. However, the number of oxides that are transparent to visible light and have the metallic-like conductivity necessary for applications is ... -
Computational prediction of cellulose solubilities in ionic liquids based on COSMO-RS
(Journal article; Peer reviewed, 2018)A computational approach is presented for prediction of cellulose solubilities in ionic liquids (ILs) based on COSMO-RS (Conductor-like Screening Model for Real Solvents). Thermodynamically stable molecular structures were ... -
Computational study of flow–induced oscillation of a simplified soft palate
(Chapter, 2017)Two-dimensional numerical simulations are employed to study fluid structure interaction of a simplified model of the soft palate in the pharynx for uniform inhalation. We take a next step towards a better biomechanical ...