Blar i Institutt for datateknologi og informatikk på tidsskrift "Bioinformatics"

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    • Methplotlib: Analysis of modified nucleotides from nanopore sequencing 

      De Coster, Wouter; Stovner, Endre Bakken; Strazisar, Mojca (Journal article; Peer reviewed, 2020)
      Summary Modified nucleotides play a crucial role in gene expression regulation. Here, we describe methplotlib, a tool developed for the visualization of modified nucleotides detected from Oxford Nanopore Technologies ...

    • PyRanges: efficient comparison of genomic intervals in Python 

      Stovner, Endre Bakken; Sætrom, Pål (Journal article; Peer reviewed, 2019)
      Complex genomic analyses often use sequences of simple set operations like intersection, overlap and nearest on genomic intervals. These operations, coupled with some custom programming, allow a wide range of analyses to ...