dc.contributor.author | Balaur, Irina | |
dc.contributor.author | Roy, Ludovic | |
dc.contributor.author | Touré, Vasundra | |
dc.contributor.author | Mazein, Alexander | |
dc.contributor.author | Auffray, Charles | |
dc.date.accessioned | 2023-03-13T08:55:41Z | |
dc.date.available | 2023-03-13T08:55:41Z | |
dc.date.created | 2023-01-13T10:30:31Z | |
dc.date.issued | 2022 | |
dc.identifier.citation | Journal of Integrative Bioinformatics (JIB). 2022, 19 (4), . | en_US |
dc.identifier.issn | 1613-4516 | |
dc.identifier.uri | https://hdl.handle.net/11250/3057844 | |
dc.description.abstract | Systems biology researchers need feasible solutions for editing and visualisation of large biological diagrams. Here, we present the ySBGN bidirectional converter that translates metabolic pathways, developed in the general-purpose yEd Graph Editor (using the GraphML format) into the Systems Biology Graphical Notation Markup Language (SBGN-ML) standard format and vice versa. We illustrate the functionality of this converter by applying it to the translation of the ReconMap resource (available in the SBGN-ML format) to the yEd-specific GraphML and back. The ySBGN tool makes possible to draw extensive metabolic diagrams in a powerful general-purpose graph editor while providing results in the standard SBGN format. | en_US |
dc.language.iso | eng | en_US |
dc.publisher | DeGruyter | en_US |
dc.rights | Navngivelse 4.0 Internasjonal | * |
dc.rights.uri | http://creativecommons.org/licenses/by/4.0/deed.no | * |
dc.title | GraphML-SBGN bidirectional converter for metabolic networks | en_US |
dc.title.alternative | GraphML-SBGN bidirectional converter for metabolic networks | en_US |
dc.type | Peer reviewed | en_US |
dc.type | Journal article | en_US |
dc.description.version | publishedVersion | en_US |
dc.source.pagenumber | 8 | en_US |
dc.source.volume | 19 | en_US |
dc.source.journal | Journal of Integrative Bioinformatics (JIB) | en_US |
dc.source.issue | 4 | en_US |
dc.identifier.doi | 10.1515/jib-2022-0030 | |
dc.identifier.cristin | 2106263 | |
cristin.ispublished | true | |
cristin.fulltext | original | |
cristin.qualitycode | 1 | |