• Multi-vehicle adaptive 3D mapping for targeted ocean sampling 

  Mo-Bjørkelund, Tore; Majaneva, Sanna Kristiina; Moreira Fragoso, Glaucia; Johnsen, Geir; Ludvigsen, Martin (Peer reviewed; Journal article, 2024)

  Expanding spatial presentation from two-dimensional profile transects to three-dimensional ocean mapping is key for a better understanding of ocean processes. Phytoplankton distributions can be highly patchy and the accurate ...

• Predicting niche overlap with model-based ordination 

  van der Veen, Bert; O'Hara, Robert Brian; Hui, Francis K. C.; Hovstad, Knut Anders (Peer reviewed; Journal article, 2024)

  The ecological niche is a fundamental concept in ecology that can be used in order better understand species relationships. The overlap in species niches provides a measure of the likelihood for species to co-occur. Most ...

• Beyond nutmeg, mace, and cloves: Checklist of the liverworts and hornworts of Maluku Islands (Moluccas), Indonesia 

  Nadhifah, Ainun; Haerida, Ida; Fastanti, Fandri Sofiana; Söderström, Lars; Hagborg, Anders; von Konrat, Matt (Journal article; Peer reviewed, 2024)

  The first ever liverwort and hornwort checklist is provided for the Maluku Islands (Moluccas/Spice Islands) of Indonesia. We report 355 accepted and 16 doubtful species and reject 22 species previously reported for Maluku ...

• Migration of endocrine and metabolism disrupting chemicals from plastic food packaging 

  Stevens, Sarah Lena Inge Marie; Bartosova, Zdenka; Völker, Johannes; Wagner, Martin (Journal article; Peer reviewed, 2024)

  Plastics constitute a vast array of substances, with over 16 000 known plastic chemicals, including intentionally and non-intentionally added substances. Thousands of chemicals, including toxic ones, are extractable from ...

• Occurrence of Novel and Legacy Per/Polyfluoroalkyl Substances (PFASs) in Scopoli’s Shearwater (Calonectris diomedea) Feathers 

  Trypidaki, Eirini; Gudmundsen, Silje Marie Bøe; Karris, Georgios; Xirouchakis, Stavros; Villa Gonzalez, Susana; Zhang, Junjie; Jaspers, Veerle Leontina B; Ciesielski, Tomasz Maciej; Tsangaris, Catherine; Asimakopoulos, Alexandros (Peer reviewed; Journal article, 2024)

  Per- and polyfluoroalkyl substances (PFASs) are contaminants of great concern due to their ubiquitous environmental occurrence in the environment and their potential adverse effects on organisms. There is currently limited ...

• A lack of genetic diversity and minimal adaptive evolutionary divergence in introduced Mysis shrimp after 50 years 

  Cheek, Rebecca G.; McLaughlin, Jessica F.; Gamboa, Maybellene P.; Marshall, Craig A.; Johnson, Brett M.; Silver, Douglas B.; Mauro, Alexander; Ghalambor, Cameron (Journal article; Peer reviewed, 2024)

  The successes of introduced populations in novel habitats often provide powerful examples of evolution and adaptation. In the 1950s, opossum shrimp (Mysis diluviana) individuals from Clearwater Lake in Minnesota, USA were ...

• Calling Structural Variants with Confidence from Short-Read Data in Wild Bird Populations 

  David, Gabriel; Bertolotti, Alicia; Layer, Ryan; Scofield, Douglas; Hayward, Alexander; Baril, Tobias; Burnett, Hamish Andrew; Gudmunds, Erik; Jensen, Henrik; Husby, Arild (Journal article; Peer reviewed, 2024)

  Comprehensive characterization of structural variation in natural populations has only become feasible in the last decade. To investigate the population genomic nature of structural variation, reproducible and high-confidence ...

• Ziphius cavirostris presence relative to the vertical and temporal variability of oceanographic conditions in the Southern California Bight 

  Schoenbeck, Clara M.; Solsona-Berga, Alba; Franks, Peter J. S.; Frasier, Kaitlin E.; Trickey, Jennifer S.; Aguilar, Catalina; Schroeder, Isaac D.; Sirovic, Ana; Bograd, Steven J.; Gopalakrishnan, Ganesh; Baumann-Pickering, Simone (Journal article; Peer reviewed, 2024)

  The oceanographic conditions of the Southern California Bight (SCB) dictate the distribution and abundance of prey resources and therefore the presence of mobile predators, such as goose-beaked whales (Ziphius cavirostris). ...

• Subtilase SBT5.2 inactivates flagellin immunogenicity in the plant apoplast 

  Buscaill, Pierre; Sanguankiattichai, Nattapong; Kaschani, Farnusch; Huang, Jie; Mooney, Brian C.; Li, Yuge; Lyu, Joy; Sueldo, Daniela Jorgelina; Kaiser, Markus; van der Hoorn, Renier A. L. (Journal article; Peer reviewed, 2024)

  Most angiosperm plants recognise the 22-residue flagellin (flg22) epitope in bacterial flagellin via homologs of cell surface receptor FLS2 (flagellin sensitive-2) and mount pattern-triggered immune responses. However, ...

• Antarctic sonobuoy surveys for blue whales from 2006-2021 reveal contemporary distribution, changes over time, and paths to further our understanding of their distribution and biology 

  Miller, Brian S.; Andrews-Goff, Virginia; Barlow, Jay; Bell, Elanor; Calderan, Susannah; Double, Michael C.; Gedamke, Jason; Kelly, Nat; Laverick, Sarah; Leaper, Russell; Miller, Elanor J.; Reeve, Kym; Sirovic, Ana; Stafford, Kathleen M. (Peer reviewed; Journal article, 2024)

  Seven passive acoustic surveys for marine mammal sounds were conducted by deploying sonobuoys along ship tracks during Antarctic voyages spanning years 2006-2021. These surveys included nearly 330° of longitude throughout ...

• Low-intensity insect herbivory could have large effects on ecosystem productivity through reduced canopy photosynthesis 

  Visakorpi, Kristiina Matilda Maria; Gripenberg, Sofia; Malhi, Yadvinder; Riutta, Terhi (Peer reviewed; Journal article, 2024)

  Our current understanding of the effect of insect herbivory on ecosystem productivity is limited. Previous studies have typically quantified only the amount of leaf area loss or have been conducted during outbreak years ...

• A Proof-of-Concept Study to Develop a Peptide-Based Vaccine against Salmon Lice Infestation in Atlantic Salmon (Salmo salar L.) 

  Johny, Amritha; Ilardi, Pedro; Olsen, Rolf-Erik; Egelandsdal, Bjørg; Slinde, Erik (Journal article; Peer reviewed, 2024)

  Proteins present in blood samples from Atlantic salmon (Salmo salar) infected with salmon lice (Lepeophtheirus salmonis) were analyzed using liquid chromatography–high-resolution mass spectrometry. Bioinformatic analyses ...

• Warming and trophic structure tightly control phytoplankton bloom amplitude, composition and succession 

  Trombetta, Thomas; Mostajir, Behzad; Courboulès, Justine; Protopapa, Maria; Mas, Sébastien; Aberle-Malzahn, Nicole; Vidussi, Francesca (Journal article; Peer reviewed, 2024)

  To better identify the responses of phytoplankton blooms to warming conditions as expected in a climate change context, an in situ mesocosm experiment was carried out in a coastal Mediterranean lagoon (Thau Lagoon, South ...

• Integration of chromosome locations and functional aspects of enhancers and topologically associating domains in knowledge graphs enables versatile queries about gene regulation 

  Mulero-Hernández, Juan; Mironov, Vladimir; Miñarro-Giménez, José Antonio; Kuiper, Martin; Fernández-Breis, Jesualdo Tomás (Journal article; Peer reviewed, 2024)

  Knowledge about transcription factor binding and regulation, target genes, cis-regulatory modules and topologically associating domains is not only defined by functional associations like biological processes or diseases ...

• Evaluating the predictive performance of presence–absence models: Why can the same model appear excellent or poor? 

  Abrego, Nerea; Ovaskainen, Otso Tapio (Journal article; Peer reviewed, 2023)

  When comparing multiple models of species distribution, models yielding higher predictive performance are clearly to be favored. A more difficult question is how to decide whether even the best model is “good enough”. Here, ...

• Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches 

  Niarakis, Anna; Ostaszewski, Marek; Mazein, Alexander; Kuperstein, Inna; Kutmon, Martina; Gillespie, Marc E.; Funahashi, Akira; Acencio, Marcio Luis; Hemedan, Ahmed; Aichem, Michael; Klein, Karsten; Czauderna, Tobias; Burtscher, Felicia; Yamada, Takahiro G.; Hiki, Yusuke; Hiroi, Noriko F.; Hu, Finterly; Pham, Nhung; Ehrhart, Friederike; Willighagen, Egon L.; Valdeolivas, Alberto; Dugourd, Aurelien; Messina, Francesco; Esteban-Medina, Marina; Peña-Chilet, Maria; Rian, Kinza; Soliman, Sylvain; Aghamiri, Sara Sadat; Puniya, Bhanwar Lal; Naldi, Aurélien; Helikar, Tomáš; Singh, Vidisha; Farinas Fernandez, Marco; Bermudez Paiva, Viviam Solangeli; Tsirvouli, Eirini; Montagud, Arnau; Noël, Vincent; Ponce-de-Leon, Miguel; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Luna, Augustin; Piñero, Janet; Furlong, Laura I.; Balaur, Irina; Rougny, Adrien; Jarosz, Yohan; Overall, Rupert W.; Phair, Robert; Perfetto, Livia; Matthews, Lisa; Rex, Devasahayam Arokia Balaya; Orlic-Milacic, Marija; Gomez, Luis Cristobal Monraz; De Meulder, Bertrand; Ravel, Jean Marie; Jassal, Bijay; Satagopam, Venkata; Wu, Guanming; Golebiewski, Martin; Gawron, Piotr; Calzone, Laurence; Beckmann, Jacques S.; Evelo, Chris T.; D’Eustachio, Peter; Schreiber, Falk; Saez-Rodriguez, Julio; Dopazo, Joaquin; Kuiper, Martin; Valencia, Alfonso; Wolkenhauer, Olaf; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard (Journal article; Peer reviewed, 2024)

  Introduction: The COVID-19 Disease Map project is a large-scale community effort uniting 277 scientists from 130 Institutions around the globe. We use high-quality, mechanistic content describing SARS-CoV-2-host interactions ...

• Uncertainty propagation in matrix population models: Gaps, importance and guidelines 

  Simmonds, Emily Grace; Jones, Owen R. (Journal article; Peer reviewed, 2023)

  1.Matrix population models (MPMs), which describe the demographic behaviour of a population based on age or stage through discrete time, are popular in ecology, evolutionary biology and conservation biology. MPMs provide ...

• Flexibility underlies differences in mitochondrial respiratory performance between migratory and non-migratory White-crowned Sparrows (Zonotrichia leucophrys) 

  Rhodes, Emma M.; Yap, Kang Nian; Mesquita, Paulo H. C.; Parry, Hailey A.; Kavazis, Andreas N.; Krause, Jesse S.; Hill, Geoffrey E.; Hood, Wendy R. (Peer reviewed; Journal article, 2024)

  Migration is one of the most energy-demanding behaviors observed in birds. Mitochondria are the primary source of energy used to support these long-distance movements, yet how mitochondria meet the energetic demands of ...

• Asian koel rapidly locates host breeding in novel nest sites 

  Nahid, Mominul Islam; Ranke, Peter Sjolte; Liang, Wei (Peer reviewed; Journal article, 2024)

  Avian brood parasites depend upon locating host nests to lay their eggs. However, how brood parasites locate host nests and select the nests for parasitism remains poorly studied. Here, we examined how a non-evicting brood ...

• SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks 

  Rougny, Adrien; Touré, Vasundra; Albanese, John; Waltemath, Dagmar; Shirshov, Denis; Sorokin, Anatoly; Bader, Gary D.; Blinov, Michael L.; Mazein, Alexander (Peer reviewed; Journal article, 2021)

View more