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dc.contributor.authorRougny, Adrien
dc.contributor.authorTouré, Vasundra
dc.contributor.authorMoodie, Stuart
dc.contributor.authorBalaur, Irina
dc.contributor.authorCzauderna, Tobias
dc.contributor.authorBorlinghaus, Hanna
dc.contributor.authorDogrusoz, Ugur
dc.contributor.authorMazein, Alexander
dc.contributor.authorDräger, Andreas
dc.contributor.authorBlinov, Michael L.
dc.contributor.authorVilléger, Alice
dc.contributor.authorHaw, Robin
dc.contributor.authorDemir, Emek
dc.contributor.authorMi, Huaiyu
dc.contributor.authorSorokin, Anatoly
dc.contributor.authorSchreiber, Falk
dc.contributor.authorLuna, Augustin
dc.date.accessioned2020-03-09T12:58:28Z
dc.date.available2020-03-09T12:58:28Z
dc.date.created2019-06-21T14:04:08Z
dc.date.issued2019
dc.identifier.citationJournal of Integrative Bioinformatics (JIB). 2019, 16 (2), 1-81.nb_NO
dc.identifier.issn1613-4516
dc.identifier.urihttp://hdl.handle.net/11250/2646038
dc.description.abstractThe Systems Biology Graphical Notation (SBGN) is an international community effort that aims to standardise the visualisation of pathways and networks for readers with diverse scientific backgrounds as well as to support an efficient and accurate exchange of biological knowledge between disparate research communities, industry, and other players in systems biology. SBGN comprises the three languages Entity Relationship, Activity Flow, and Process Description (PD) to cover biological and biochemical systems at distinct levels of detail. PD is closest to metabolic and regulatory pathways found in biological literature and textbooks. Its well-defined semantics offer a superior precision in expressing biological knowledge. PD represents mechanistic and temporal dependencies of biological interactions and transformations as a graph. Its different types of nodes include entity pools (e.g. metabolites, proteins, genes and complexes) and processes (e.g. reactions, associations and influences). The edges describe relationships between the nodes (e.g. consumption, production, stimulation and inhibition). This document details Level 1 Version 2.0 of the PD specification, including several improvements, in particular: 1) the addition of the equivalence operator, subunit, and annotation glyphs, 2) modification to the usage of submaps, and 3) updates to clarify the use of various glyphs (i.e. multimer, empty set, and state variable).nb_NO
dc.language.isoengnb_NO
dc.publisherDe Gruyter Opennb_NO
dc.rightsNavngivelse 4.0 Internasjonal*
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/deed.no*
dc.titleSystems Biology Graphical Notation: Process Description language Level 1 Version 2.0nb_NO
dc.typeJournal articlenb_NO
dc.typePeer reviewednb_NO
dc.description.versionpublishedVersionnb_NO
dc.source.pagenumber1-81nb_NO
dc.source.volume16nb_NO
dc.source.journalJournal of Integrative Bioinformatics (JIB)nb_NO
dc.source.issue2nb_NO
dc.identifier.doi10.1515/jib-2019-0022
dc.identifier.cristin1706795
dc.description.localcode© 2019, Adrien Rougny et al., published by Walter de Gruyter GmbH, Berlin/Boston.This work is licensed under the Creative Commons Attribution 4.0 Public License.nb_NO
cristin.unitcode194,66,10,0
cristin.unitnameInstitutt for biologi
cristin.ispublishedtrue
cristin.fulltextoriginal
cristin.qualitycode1


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