• An accurate assignment test for extremely low-coverage whole-genome sequence data 

      Ferrari, Giada; Atmore, Lane Margaret; Jentoft, Sissel; Jakobsen, Kjetill Sigurd; Makowiecki, Daniel; Barrett, James; Star, Bastiaan (Journal article; Peer reviewed, 2021)
      Genomic assignment tests can provide important diagnostic biological characteristics, such as population of origin or ecotype. Yet, assignment tests often rely on moderate- to high-coverage sequence data that can be difficult ...
    • Adaptation to the High-Arctic island environment despite long-term reduced genetic variation in Svalbard reindeer 

      Dussex, Nicolas; Tørresen, Ole Kristian; van der Valk, Tom; Le Moullec, Mathilde; Veiberg, Vebjørn; Tooming-Klunderud, Ave; Skage, Morten; Garmann-Aarhus, Benedicte; Wood, Jonathan; Rasmussen, Jacob Agerbo; Pedersen, Åshild Ønvik; Martin, Sarah Louise; Røed, Knut; Jakobsen, Kjetill Sigurd; Dalén, Love; Hansen, Brage Bremset; Martin, Michael David (Peer reviewed; Journal article, 2023)
      Typically much smaller in number than their mainland counterparts, island populations are ideal systems to investigate genetic threats to small populations. The Svalbard reindeer (Rangifer tarandus platyrhynchus) is an ...
    • Adaptation to the High-Arctic island environment despite long-term reduced genetic variation in Svalbard reindeer 

      Dussex, Nicolas; Tørresen, Ole Kristian; van der Valk, Tom; Le Moullec, Mathilde; Veiberg, Vebjørn; Tooming-Klunderud, Ave; Skage, Morten; Garmann-Aarhus, Benedicte; Wood, Jonathan; Rasmussen, Jacob Agerbo; Pedersen, Åshild Ønvik; Martin, Sarah Louise; Røed, Knut; Jakobsen, Kjetill Sigurd; Dalén, Love; Hansen, Brage Bremset; Martin, Michael David (Peer reviewed; Journal article, 2023)
      Typically much smaller in number than their mainland counterparts, island populations are ideal systems to investigate genetic threats to small populations. The Svalbard reindeer (Rangifer tarandus platyrhynchus) is an ...
    • Ancient DNA evidence for the ecological globalization of cod fishing in medieval and post-medieval Europe 

      Martinez Garcia, Lourdes; Ferrari, Giada; Cuevas, Angelica; Atmore, Lane Margaret; López-Arias, Begoña; Culling, Mark; Llorente-Rodríguez, Laura; Morales-Muñiz, Arturo; Roselló-Izquierdo, Eufrasia; Quirós, Juan Antonio; Marlasca-Martín, Ricard; Hänfling, Bernd; Hutchinson, William F.; Jakobsen, Kjetill Sigurd; Jentoft, Sissel; Orton, David; Star, Bastiaan; Barrett, James (Peer reviewed; Journal article, 2022)
      Understanding the historical emergence and growth of long-range fisheries can provide fundamental insights into the timing of ecological impacts and the development of coastal communities during the last millennium. ...
    • Ancient DNA reveals a southern presence of the Northeast Arctic cod during the Holocene 

      Martinez Garcia, Lourdes; Ferrari, Giada; Hufthammer, Anne Karin; Jakobsen, Kjetill Sigurd; Jentoft, Sissel; Barrett, James Harold; Star, Bastiaan (Peer reviewed; Journal article, 2022)
      Climate change has been implicated in an increased number of distributional shifts of marine species during the last century. Nonetheless, it is unclear whether earlier climatic fluctuations had similar impacts. We use ...
    • The Earth BioGenome Project 2020: Starting the clock 

      Lewin, Harris A.; Richards, Stephen; Aiden, Erez Lieberman; Allende, Miguel L.; Archibald, John M.; Bálint, Miklós; Barker, Katharine B.; Baumgartner, Bridget; Belov, Katherine; Bertorelle, Giorgio; Blaxter, Mark L.; Cai, Jing; Caperello, Nicolette D.; Carlson, Keith; Castilla-Rubio, Juan Carlos; Chaw, Shu-Miaw; Chen, Lei; Childers, Anna K.; Coddington, Jonathan A.; Conde, Dalia A.; Corominas, Montserrat; Crandall, Keith A.; Crawford, Andrew J.; DiPalma, Federica; Durbin, Richard; Ebenezer, ThankGod E.; Edwards, Scott V.; Fedrigo, Olivier; Flicek, Paul; Formenti, Giulio; Gibbs, Richard A.; Gilbert, Marcus Thomas Pius; Goldstein, Melissa M.; Graves, Jennifer Marshall; Greely, Henry T.; Grigoriev, Igor V.; Hackett, Kevin J.; Hall, Neil; Haussler, David; Helgen, Kristofer M.; Hogg, Carolyn J.; Isobe, Sachiko; Jakobsen, Kjetill Sigurd; Janke, Axel; Jarvis, Erich D.; Johnson, Warren E.; Jones, Steven J.M.; Karlsson, Elinor K.; Kersey, Paul J.; Kim, Jin-Hyoung; Kress, W. John; Kuraku, Shigehiro; Lawniczak, Mara K.N.; Leebens-Mack, James H.; Li, Xueyan; Lindblad-Toh, Kerstin; Liu, Xin; Lopez, Jose V.; Marques-Bonet, Tomas; Mazard, Sophie; Mazet, Jonna A.K.; Mazzoni, Camila J.; Myers, Eugene W.; O’Neill, Rachel J.; Paez, Sadye; Park, Hyun; Robinson, Gene E.; Roquet, Cristina; Ryder, Oliver A.; Sabir, Jamal S.M.; Shaffer, H. Bradley; Shank, Timothy M.; Sherkow, Jacob S.; Soltis, Pamela S.; Tang, Boping; Tedersoo, Leho; Uliano-Silva, Marcela; Wang, Kun; Wei, Xiaofeng; Wetzer, Regina; Wilson, Julia L.; Xu, Xun; Yang, Huanming; Yoder, Anne D.; Zhang, Guojie (Peer reviewed; Journal article, 2022)
    • The era of reference genomes in conservation genomics 

      Formenti, Giulio; Theissinger, Kathrin; Fernandes, Carlos; Bista, Iliana; Bombarely, Aureliano; Bleidorn, Christoph; Ciofi, Claudio; Crottini, Angelica; Godoy, José A.; Höglund, Jacob; Malukiewicz, Joanna; Mouton, Alice; Oomen, Rebekah Alice; Paez, Sadye; Palsbøll, Per J.; Pampoulie, Christophe; Ruiz-López, María J.; Svardal, Hannes; Theofanopoulou, Constantina; de Vries, Jantina; Waldvogel, Ann-Marie; Zhang, Guojie; Mazzoni, Camila J.; Jarvis, Erich D.; Bálint, Miklós; Čiampor, Fedor; Aghayan, Sargis A.; Alioto, Tyler S.; Almudí, Isabel; Alvarez, Nadir; Alves, Paulo C.; Amorim, Isabel R.; Antunes, Agostinho; Arribas, Paula; Baldrian, Petr; Berg, Paul Ragnar; Bertorelle, Giorgio; Böhne, Astrid; Bonisoli-Alquati, Andrea; Boštjančić, Ljudevit L.; Boussau, Bastien; Breton, Catherine M.; Buzan, Elena; Campos, Paula F.; Carreras, Carlos; Castro, L. Filipe; Chueca, Luis J.; Conti, Elena; Cook-Deegan, Robert; Croll, Daniel; Cunha, Mónica V.; Delsuc, Frédéric; Dennis, Alice B.; Dimitrov, Dimitar; Gilbert, Marcus Thomas Pius; Heintzman, Peter D.; Jakobsen, Kjetill Sigurd; Jentoft, Sissel; Matschiner, Michael (Peer reviewed; Journal article, 2022)
      Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique ...
    • Historical demographic processes dominate genetic variation in ancient Atlantic cod mitogenomes 

      Martinez Garcia, Lourdes; Ferrari, Giada; Oosting, Tom; Ballantyne, Rachel; van der Jagt, Inge; Ystgaard, Ingrid; Harland, Jennifer; Nicholson, Rebecca; Hamilton-Dyer, Sheila; Baalsrud, Helle Tessand; Brieuc, Marine Servane Ono; Atmore, Lane; Burns, Finlay; Schmölcke, Ulrich; Jakobsen, Kjetill Sigurd; Jentoft, Sissel; Orton, David; Hufthammer, Anne Karin; Barrett, James; Star, Bastiaan (Peer reviewed; Journal article, 2021)
      Ancient DNA (aDNA) approaches have been successfully used to infer the long-term impacts of climate change, domestication, and human exploitation in a range of terrestrial species. Nonetheless, studies investigating such ...
    • How genomics can help biodiversity conservation 

      Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul Ragnar; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, Angelica; Gallo, Guido R.; Godoy, José A.; Jentoft, Sissel; Malukiewicz, Joanna; Mouton, Alice; Oomen, Rebekah Alice; Paez, Sadye; Palsbøll, Per J.; Pampoulie, Christophe; Ruiz-López, María J.; Secomandi, Simona; Svardal, Hannes; Theofanopoulou, Constantina; de Vries, Jan; Waldvogel, Ann-Marie; Zhang, Guojie; Jarvis, Erich D.; Bálint, Miklós; Ciofi, Claudio; Waterhouse, Robert M.; Mazzoni, Camila J.; Höglund, Jacob; Aghayan, Sargis A.; Alioto, Tyler S.; Almudí, Isabel; Alvarez, Nadir; Alves, Paulo C.; do Rosario, Isabel R. Amorim; Antunes, Agostinho; Arribas, Paula; Baldrian, Petr; Bertorelle, Giorgio; Böhne, Astrid; Bonisoli-Alquati, Andrea; Boštjančić, Ljudevit L.; Boussau, Bastien; Breton, Catherine M.; Buzan, Elena; Campos, Paula F.; Carreras, Carlos; Castro, L. Filipe C.; Chueca, Luis J.; Gilbert, Marcus Thomas Pius; Heintzman, Peter D.; Jakobsen, Kjetill Sigurd; Matschiner, Michael; Zammit, Gabrielle (Journal article; Peer reviewed, 2023)
      The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main ...