Browsing NTNU Open by Author "Voigt, Andre"
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A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma
Voigt, Andre; Nowick, Katja; Almaas, Eivind (Journal article; Peer reviewed, 2017)Differential co-expression network analyses have recently become an important step in the investigation of cellular differentiation and dysfunctional gene-regulation in cell and tissue disease-states. The resulting networks ... -
Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks
Voigt, Andre; Almaas, Eivind (Journal article; Peer reviewed, 2019)Background For more than a decade, gene expression data sets have been used as basis for the construction of co-expression networks used in systems biology investigations, leading to many important discoveries in a wide ... -
Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy
Voigt, Andre; Omholt, Stig William; Almaas, Eivind (Peer reviewed; Journal article, 2022)With limited availability of vaccines, an efficient use of the limited supply of vaccines in order to achieve herd immunity will be an important tool to combat the wide-spread prevalence of COVID-19. Here, we compare a ... -
Containing pandemics through targeted testing of households
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind (Peer reviewed; Journal article, 2021)Background While invasive social distancing measures have proven efficient to control the spread of pandemics failing wide-scale deployment of vaccines, they carry vast societal costs. The development of a diagnostic ... -
Fracturing of Optimal Paths in a Random Lattice
Voigt, Andre (Master thesis, 2011)The subject of this thesis is the study of the creation of fault lines in a random lattice, provoked by the successive failure of optimal paths. Using the recently developed Optimal Path Cracked model, we investigate how ... -
High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66
Simensen, Vetle; Voigt, Andre; Almaas, Eivind (Journal article; Peer reviewed, 2021)The long‐chain, ω‐3 polyunsaturated fatty acids (PUFAs) (e.g., eicosapentaenoic acid [EPA] and docosahexaenoic acid [DHA]), are essential for humans and animals, including marine fish species. Presently, the primary source ... -
Reconstruction of a genome-scale metabolic model for the analysis of the leaginous phenotype of Aurantiochytrium sp. T66
Simensen, Vetle (Master thesis, 2019)Thraustochytrider er heterotrofe protister som under bestemte betingelser akkumulerer store mengder triglyserider som er svært rike på omega-3-flerumettede fettsyrer. Det økende globale behovet for disse fettsyrene har ... -
Transcriptomic Response Analysis of Escherichia coli to Palladium Stress
Joudeh, Nadeem; Saragliadis, Athanasios; Schulz, Christian; Voigt, Andre; Almaas, Eivind; Linke, Dirk (Peer reviewed; Journal article, 2021)Palladium (Pd), due to its unique catalytic properties, is an industrially important heavy metal especially in the form of nanoparticles. It has a wide range of applications from automobile catalytic converters to the ... -
wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool
Gysi, Deisy Morselli; Voigt, Andre; Fragoso, Tiago de Miranda; Almaas, Eivind; Nowick, Katja (Journal article; Peer reviewed, 2018)Background Network analyses, such as of gene co-expression networks, metabolic networks and ecological networks have become a central approach for the systems-level study of biological data. Several software packages exist ...