Browsing NTNU Open by Author "Husby, Arild"
Now showing items 1-20 of 22
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A high density linkage map enables a second generation collared flycatcher genome assembly and reveals the pattern of avian recombination rate variation and chromosomal evolution.
kawakami, takeshi; smeds, Linnea; Backström, Niclas; Husby, Arild; Qvarnström, Anna; Ellegren, Hans; Olason, Pall; Mugal, Carina (Journal article; Peer reviewed, 2014-06-17)Detailed linkage and recombination rate maps are necessary to use the full potential of genome sequencing and population genomic analyses. We used a custom collared flycatcher 50 K SNP array to develop a high-density linkage ... -
Challenges and prospects in genome wide QTL mapping of standing genetic variation in natural populations.
Schielzeth, Holger; Husby, Arild (Journal article, 2014)A considerable challenge in evolutionary genetics is to understand the genetic mechanisms that facilitate or impede evolutionary adaptation in natural populations. For this, we must understand the genetic loci contributing ... -
Controlling for P-value inflation in allele frequency change in experimental evolution and artificial selection experiments
Kemppainen, Petri; Rønning, Bernt; Kvalnes, Thomas; Hagen, Ingerid Julie; Ringsby, Thor Harald; Billing, Anna Maria; Pärn, Henrik; Lien, Sigbjørn; Husby, Arild; Sæther, Bernt-Erik; Jensen, Henrik (Journal article; Peer reviewed, 2017)Experimental evolution studies can be used to explore genomic response to artificial and natural selection. In such studies, loci that display larger allele frequency change than expected by genetic drift alone are assumed ... -
Dispersal in a house sparrow metapopulation: An integrative case study of genetic assignment calibrated with ecological data and pedigree information
Saatoglu, Fikriye Dilan; Niskanen, Alina Katariina; Kuismin, Markku; Ranke, Peter Sjolte; Hagen, Ingerid Julie; Araya-Ajoy, Yimen; Kvalnes, Thomas; Pärn, Henrik; Rønning, Bernt; Ringsby, Thor Harald; Sæther, Bernt-Erik; Husby, Arild; Sillanpää, Mikko J.; Jensen, Henrik (Peer reviewed; Journal article, 2021)Dispersal has a crucial role determining ecoevolutionary dynamics through both gene flow and population size regulation. However, to study dispersal and its consequences, one must distinguish immigrants from residents. ... -
Effects of inbreeding on lay date in house sparrows (Passer domesticus)
Muller, Amandine Sophie (Master thesis, 2021)Innavlsdepresjon (en reduksjon i individuell fitness forårsaket av innavl) har blitt observert hos mange ulike arter, men mekanismene som gir innavlsdepresjon er fremdeles uklare. Innavl og innavlsdepresjon studeres vanligvis ... -
Effects of Spring Temperatures on the Strength of Selection on Timing of Reproduction in a Long-Distance Migratory Bird
Visser, Marcel E.; Gienapp, Phillip; Husby, Arild; Morrisey, Michael; de la Hera, Ivan; Pulido, Francisco; Both, Christiaan (Journal article; Peer reviewed, 2015)Climate change has differentially affected the timing of seasonal events for interacting trophic levels, and this has often led to increased selection on seasonal timing. Yet, the environmental variables driving this ... -
Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k SNP array.
Kawakami, Takeshi; Backström, Niclas; Burri, Reto; Husby, Arild; Olason, PI; Rice, A M; Qvarström, Anna; Ellegren, Hans (Journal article; Peer reviewed, 2014)With the access to draft genome sequence assemblies and whole-genome resequencing data from population samples, molecular ecology studies will be able to take truly genome-wide approaches. This now applies to an avian model ... -
Genetic Basis of Variation in Bill Morphology in a Free-Living House Sparrow Metapopulation
Lundregan, Sarah (Master thesis, 2017)Bill morphology is an ecologically important trait, which shows substantial phenotypic variation, is highly heritable and is under selection in many bird species. These characteristics underscore the suitability of bill ... -
Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes
Burri, Reto; Bolivar, Paulina; Husby, Arild; Qvarnström, Anna; Uebbing, Severin; Ellegren, Hans; Smeds, Linnea; Kawakami, Takeshi (Journal article; Peer reviewed, 2014)The molecular characteristics of the pseudoautosomal region (PAR) of sex chromosomes remain elusive. Despite significant genome-sequencing efforts, the PAR of highly differentiated avian sex chromosomes remains to be ... -
Impact of genetics and epigenetic processes on parasite infection dynamics in the house sparrow
Lundregan, Sarah Louise (Doctoral theses at NTNU;2022:399, Doctoral thesis, 2022)Parasites are important drivers of ecological and evolutionary processes in natural populations, and can exert strong selective pressures on their hosts by reducing host fitness. Investigating the mechanisms involved in ... -
Increasing the power of genome wide association studies in natural populations using repeated measures - evaluation and implementation
Rönnegård, Lars; McFarlane, S. Eryn; Husby, Arild; Kawakami, Takeshi; Ellegren, Hans; Qvarnström, Anna; Freckleton, Robert (Journal article; Peer reviewed, 2016)1. Genomewide association studies (GWAS) enable detailed dissections of the genetic basis for organisms’ ability to adapt to a changing environment. In long-term studies of natural populations, individuals are often marked ... -
Infection by a helminth parasite is associated with changes in DNA methylation in the house sparrow
Lundregan, Sarah; Mäkinen, Hannu; Buer, Amberly; Holand, Håkon; Jensen, Henrik; Husby, Arild (Peer reviewed; Journal article, 2022)Parasites can exert strong selective pressures on their hosts and influence the evolution of host immunity. While several studies have examined the genetic basis for parasite resistance, the role of epigenetics in the ... -
Inferences of genetic architecture of bill morphology in house sparrow using a high-density SNP array point to a polygenic basis
Lundregan, Sarah; Hagen, Ingerid Julie; Gohli, Jostein; Niskanen, Alina Katariina; Kemppainen, Petri; Ringsby, Thor Harald; Kvalnes, Thomas; Pärn, Henrik; Rønning, Bernt; Holand, Håkon; Ranke, Peter Sjolte; Båtnes, Anna Solvang; Selvik, Linn-Karina M.; Lien, Sigbjørn; Sæther, Bernt-Erik; Husby, Arild; Jensen, Henrik (Journal article; Peer reviewed, 2018)Understanding the genetic architecture of quantitative traits can provide insights into the mechanisms driving phenotypic evolution. Bill morphology is an ecologically important and phenotypically variable trait, which is ... -
Insights into the genetic architecture of morphological and sexually selected traits in two passerine bird species
Silva, Catarina; McFarlane, S. Eryn; Hagen, Ingerid Julie; Rönnegård, Lars; Billing, Anna; Kvalnes, Thomas; Kemppainen, Petri; Rønning, Bernt; Ringsby, Thor Harald; Sæther, Bernt-Erik; Qvarnström, Anna; Ellegren, Hans; Jensen, Henrik; Husby, Arild (Journal article; Peer reviewed, 2017)Knowledge about the underlying genetic architecture of phenotypic traits is needed to understand and predict their evolutionary dynamics. The number of causal loci underlying most phenotypic traits, the magnitude of their ... -
Interspecific analysis of vehicle avoidance behaviour in birds
Husby, Arild; Husby, Magne (Journal article, 2014)Among the most widespread forms of anthropogenic modification of the natural landscape is road construction, with vehicle mortality a major issue affecting amphibians, reptiles, mammals, and birds. Why some species are ... -
Non-autosomal genetic variation in carotenoid coloration
Evans, SR; Schielzeth, Holger; Forstmeier, W.; Sheldon, Ben C; Husby, Arild (Journal article; Peer reviewed, 2014)Carotenoid-based coloration plays an important role in signaling, is often sexually dimorphic, and is potentially subject to directional and/or sex-specific selection. To understand the evolutionary dynamics of such color ... -
Seasonal Variation in Genome-Wide DNA Methylation Patterns and the Onset of Seasonal Timing of Reproduction in Great Tits
Viitaniemi, Heidi M.; Verhagen, Irene; Visser, Marcel E; Honkela, Antti; van Oers, Kees; Husby, Arild (Journal article; Peer reviewed, 2019)In seasonal environments, timing of reproduction is a trait with important fitness consequences, but we know little about the molecular mechanisms that underlie the variation in this trait. Recently, several studies put ... -
Spatio-temporal dispersal dynamics of a natural house sparrow metapopulation
Saatoglu, Dilan (Doctoral theses at NTNU;2023:341, Doctoral thesis, 2023)Dispersal plays a critical role in determining eco-evolutionary dynamics by affecting population sizes and causing gene flow, which influence spatial correlations in demography and genetic structure of local populations. ... -
Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons
Lindner, Melanie; Verhagen, Irene; Viitaniemi, Heidi; Laine, Veronika; Visser, Marcel E; Husby, Arild; van Oers, Kees (Journal article; Peer reviewed, 2021) -
Temporally replicated DNA methylation patterns in great tit using reduced representation bisulfite sequencing
Makinen, Hannu Sakari; Viitaniemi, Heidi M.; Visser, Marcel E; Verhagen, Irene; van Oers, Kees; Husby, Arild (Journal article; Peer reviewed, 2019)Seasonal timing of reproduction is an important fitness trait in many plants and animals but the underlying molecular mechanism for this trait is poorly known. DNA methylation is known to affect timing of reproduction in ...