Blar i NTNU Open på forfatter "Zobolas, John"
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CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator
Touré, Vasundra; Zobolas, John; Kuiper, Martin; Vercruysse, Steven (Journal article; Peer reviewed, 2021)Molecular causal interactions are defined as regulatory connections between biological components. They are commonly retrieved from biological experiments and can be used for connecting biological molecules together to ... -
CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination
Perfetto, Livia; Acencio, Marcio Luis; Bradley, Glyn; Cesareni, Gianni; del Toro, Noemi; Fazekas, David; Hermjakob, Henning; Korcsmaros, Tamas; Kuiper, Martin; Lægreid, Astrid; Lo Surdo, Prisca; Lovering, Ruth C.; Orchard, Sandra; Porras, Pablo; Thomas, Paul; Touré, Vasundra; Zobolas, John; Licata, Luana (Peer reviewed; Journal article, 2019)Motivation Combining multiple layers of information underlying biological complexity into a structured framework represent a challenge in systems biology. A key task is the formalization of such information in models ... -
emba: R package for analysis and visualization of biomarkers in boolean model ensembles
Zobolas, John; Kuiper, Martin; Flobak, Åsmund (Journal article; Peer reviewed, 2020) -
IIb-RAD-sequencing coupled with random forest classification indicates regional population structuring and sex-specific differentiation in salmon lice (Lepeophtheirus salmonis)
Guragain, Prashanna; Båtnes, Anna Solvang; Zobolas, John; Olsen, Yngvar; Bones, Atle M.; Winge, Per (Peer reviewed; Journal article, 2022)The aquaculture industry has been dealing with salmon lice problems forming serious threats to salmonid farming. Several treatment approaches have been used to control the parasite. Treatment effectiveness must be optimized, ... -
Software implementations allowing new approaches toward data analysis, modeling and curation of biological knowledge for Systems Medicine
Zobolas, John (Doctoral theses at NTNU;2021:255, Doctoral thesis, 2021)Cancer is one of the leading causes of death globally. To combat cancer, scientists want to understand the mechanisms that drive this disease so that effective treatments can be developed. However, regulatory mechanisms ... -
UniBioDicts: Unified access to biological dictionaries
Zobolas, John; Touré, Vasundra; Kuiper, Martin; Vercruysse, Steven (Peer reviewed; Journal article, 2020)We present a set of software packages that provide uniform access to diverse biological vocabulary resources that are instrumental for current biocuration efforts and tools. The Unified Biological Dictionaries (UniBioDicts ...