Blar i NTNU Open på forfatter "Costa, Filipe O."
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BAGS: An automated Barcode, Audit & Grade System for DNA barcode reference libraries
Fontes, João T.; Vieira, Pedro E.; Ekrem, Torbjørn; Soares, Pedro; Costa, Filipe O. (Peer reviewed; Journal article, 2020)Biodiversity studies greatly benefit from molecular tools, such as DNA metabarcoding, which provides an effective identification tool in biomonitoring and conservation programmes. The accuracy of species‐level assignment, ... -
The curious and intricate case of the European Hediste diversicolor (Annelida, Nereididae) species complex, with description of two new species
Teixeira, Marcos A. L.; Bakken, Torkild; Vieira, Pedro E.; Langeneck, Joachim; Sampieri, Bruno R.; Kasapidis, Panagiotis; Ravara, AscensÃO; Nygren, Arne; Costa, Filipe O. (Peer reviewed; Journal article, 2022)Past molecular studies using mtDNA sequences and alloenzymes signalled the existence of at least two cryptic species within the Hediste diversicolor morphotype, in European coasts. However, to this day, no new species ... -
DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work
Weigand, Hannah; Beermann, Arne J.; Čiampor, Fedor; Costa, Filipe O.; Csabai, Zoltán; Duarte, Sofia; Geiger, Matthias F.; Grabowski, Michał; Rimet, Frédéric; Rulik, Björn; Strand, Malin; Szucsich, Nicholaus; Weigand, Alexander M.; Willassen, Endre; Wyler, Sofia A.; Bouchez, Agnès; Borja, Ángel; Čiamporová-Zaťovičová, Zuzana; Ferreira, Sónia; Dijkstra, Klaas-Douwe B.; Eisendle, Ursula; Freyhof, Jörg; Gadawski, Piotr; Graf, Wolfram; Haegerbaeumer, Arne; van der Hoorn, Berry B.; Japoshvili, Bella; Keresztes, Lujza; Keskin, Emre; Leese, Florian; Macher, Jan N.; Mamos, Tomasz; Paz, Guy; Pešić, Vladimir; Pfannkuchen, Daniela Maric; Pfannkuchen, Martin Andreas; Price, Benjamin W.; Rinkevich, Buki; Teixeira, Marcos A.L.; Várbíró, Gábor; Ekrem, Torbjørn (Journal article; Peer reviewed, 2019)Effective identification of species using short DNA fragments (DNA barcoding and DNA metabarcoding) requires reliable sequence reference libraries of known taxa. Both taxonomically comprehensive coverage and content quality ... -
The Future of DNA Barcoding: Reflections from Early Career Researchers
Grant, Danielle M.; Brodnicke, Ole Bjørn; Evankow, Ann; Ferreira, André O.; Fontes, João T.; Hansen, Aslak Kappel; Jensen, Mads Reinholdt; Kalaycı, Tuğba Ergül; Leeper, Alexandra Eve Joyce; Patil, Shalaka Kiran; Prati, Sebastian; Reunamo, Anna; Roberts, Aradhana J; Shigdel, Rajesh; Tyukosova, Valentina; Bendiksby, Mika; Blaalid, Rakel; Costa, Filipe O.; Hollingsworth, Peter M.; Stur, Elisabeth; Ekrem, Torbjørn (Journal article; Peer reviewed, 2021)Over the last two decades, the use of DNA barcodes has transformed our ability to identify and assess life on our planet. Both strengths and weaknesses of the method have been exemplified through thousands of peer-reviewed ... -
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
Rimet, Frédéric; Aylagas, Eva; Borja, Angel; Bouchez, Agnès; Canino, Alexis; Chauvin, Christian; Chonova, Teofana; Čiampor, Fedor; Costa, Filipe O.; Ferrari, Benoit J. D.; Gastineau, Romain; Goulon, Chloe; Gugger, Murièl; Holzmann, Maria; Jahn, Regine; Kahlert, Maria; Kusber, Wolf-Hennig; Laplace-Treyture, Christophe; Leese, Florian; Leliaert, Frederik; Mann, David G.; Marchand, Frédérik; Méléder, Vona; Pawlowski, Jan; Rasconi, Serena; Revera, Sinziana; Rougerie, Rodolphe; Schweizer, Magali; Trobajo, Rosa; Vasselon, Valentin; Vivien, Régis; Weigand, Alexander M.; Witkowski, Andrzej; Zimmermann, Jonas; Ekrem, Torbjørn (Peer reviewed; Journal article, 2021)DNA barcoding and metabarcoding is increasingly used to effectively and precisely assess and monitor biodiversity in aquatic ecosystems. As these methods rely on data availability and quality of barcode reference libraries, ...