Browsing NTNU Open by Author "Star, Bastiaan"
Now showing items 1-15 of 15
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An accurate assignment test for extremely low-coverage whole-genome sequence data
Ferrari, Giada; Atmore, Lane Margaret; Jentoft, Sissel; Jakobsen, Kjetill Sigurd; Makowiecki, Daniel; Barrett, James; Star, Bastiaan (Journal article; Peer reviewed, 2021)Genomic assignment tests can provide important diagnostic biological characteristics, such as population of origin or ecotype. Yet, assignment tests often rely on moderate- to high-coverage sequence data that can be difficult ... -
Ancient DNA evidence for the ecological globalization of cod fishing in medieval and post-medieval Europe
Martinez Garcia, Lourdes; Ferrari, Giada; Cuevas, Angelica; Atmore, Lane Margaret; López-Arias, Begoña; Culling, Mark; Llorente-Rodríguez, Laura; Morales-Muñiz, Arturo; Roselló-Izquierdo, Eufrasia; Quirós, Juan Antonio; Marlasca-Martín, Ricard; Hänfling, Bernd; Hutchinson, William F.; Jakobsen, Kjetill Sigurd; Jentoft, Sissel; Orton, David; Star, Bastiaan; Barrett, James (Peer reviewed; Journal article, 2022)Understanding the historical emergence and growth of long-range fisheries can provide fundamental insights into the timing of ecological impacts and the development of coastal communities during the last millennium. ... -
Ancient DNA reveals a southern presence of the Northeast Arctic cod during the Holocene
Martinez Garcia, Lourdes; Ferrari, Giada; Hufthammer, Anne Karin; Jakobsen, Kjetill Sigurd; Jentoft, Sissel; Barrett, James Harold; Star, Bastiaan (Peer reviewed; Journal article, 2022)Climate change has been implicated in an increased number of distributional shifts of marine species during the last century. Nonetheless, it is unclear whether earlier climatic fluctuations had similar impacts. We use ... -
Ancient DNA sequence quality is independent of fish bone weight
Atmore, Lane Margaret; Ferrari, Giada; Martinez Garcia, Lourdes; van der Jagt, Inge; Blevis, Rachel; Granado, José; Häberle, Simone; Dierickx, Katrien; Quinlan, Liz M.; Lõugas, Lembi; Makowiecki, Daniel; Hufthammer, Anne Karin; Barrett, James; Star, Bastiaan (Peer reviewed; Journal article, 2023)The field of ancient DNA (aDNA) typically uses between 50 and 200 mg of minimum input weight of bone material for the extraction of DNA from archaeological remains. While laboratory and analysis techniques have focused on ... -
Complex population structure of the Atlantic puffin revealed by whole genome analyses
Kersten, Oliver; Star, Bastiaan; Leigh, Deborah M.; Anker-Nilssen, Tycho; Strøm, Hallvard; Danielsen, Jóhannis; Descamps, Sebastien; Erikstad, Kjell E.; Fitzsimmons, Michelle G.; Fort, Jérôme; Hansen, Erpur S.; Harris, Mike P.; Irestedt, Martin; Kleven, Oddmund; Mallory, Mark L.; Jakobsen, Kjetill S.; Boessenkool, Sanne (Peer reviewed; Journal article, 2021)The factors underlying gene flow and genomic population structure in vagile seabirds are notoriously difficult to understand due to their complex ecology with diverse dispersal barriers and extensive periods at sea. Yet, ... -
Ecological globalisation, serial depletion and the medieval trade of walrus rostra
Barrett, James; Boessenkool, Sanne; O'Connell, Tamsin C; Kneale, Catherine; Star, Bastiaan (Journal article; Peer reviewed, 2020)The impacts of early ecological globalisation may have had profound economic and environmental consequences for human settlements and animal populations. Here, we review the extent of such historical impacts by investigating ... -
Historical demographic processes dominate genetic variation in ancient Atlantic cod mitogenomes
Martinez Garcia, Lourdes; Ferrari, Giada; Oosting, Tom; Ballantyne, Rachel; van der Jagt, Inge; Ystgaard, Ingrid; Harland, Jennifer; Nicholson, Rebecca; Hamilton-Dyer, Sheila; Baalsrud, Helle Tessand; Brieuc, Marine Servane Ono; Atmore, Lane; Burns, Finlay; Schmölcke, Ulrich; Jakobsen, Kjetill Sigurd; Jentoft, Sissel; Orton, David; Hufthammer, Anne Karin; Barrett, James; Star, Bastiaan (Peer reviewed; Journal article, 2021)Ancient DNA (aDNA) approaches have been successfully used to infer the long-term impacts of climate change, domestication, and human exploitation in a range of terrestrial species. Nonetheless, studies investigating such ... -
Holocene deglaciation drove rapid genetic diversification of Atlantic walrus
Ruiz-Puerta, Emily J.; Keighley, Xénia; Desjardins, Sean P. A.; Gotfredsen, Anne Birgitte; Pan, Shyong En; Star, Bastiaan; Boessenkool, Sanne; Barrett, James Harold; McCarthy, Morgan L.; Andersen, Liselotte W.; Born, Erik W.; Howse, Lesley R.; Szpak, Paul; Pálsson, Snæbjörn; Malmquist, Hilmar J.; Rufolo, Scott; Jordan, Peter D.; Olsen, Morten Tange (Peer reviewed; Journal article, 2023)Rapid global warming is severely impacting Arctic ecosystems and is predicted to transform the abundance, distribution and genetic diversity of Arctic species, though these linkages are poorly understood. We address this ... -
Holocene deglaciation drove rapid genetic diversification of Atlantic walrus
Ruiz-Puerta, Emily J.; Keighley, Xénia; Desjardins, Sean P. A.; Gotfredsen, Anne Birgitte; Pan, Shyong En; Star, Bastiaan; Boessenkool, Sanne; Barrett, James Harold; McCarthy, Morgan L.; Andersen, Liselotte W.; Born, Erik W.; Howse, Lesley R.; Szpak, Paul; Pálsson, Snæbjörn; Malmquist, Hilmar J.; Rufolo, Scott; Jordan, Peter D.; Olsen, Morten Tange (Peer reviewed; Journal article, 2023)Rapid global warming is severely impacting Arctic ecosystems and is predicted to transform the abundance, distribution and genetic diversity of Arctic species, though these linkages are poorly understood. We address this ... -
The Once and Future Fish: Assessing a Millennium of Atlantic Herring Exploitation Through Mixed-Stock Analysis and Ancient DNA
Atmore, Lane; van der Jagt, Inge; Boilard, Aurélie; Häberle, Simone; Blevis, Rachel; Dierickx, Katrien Alfred C; Quinlan, Liz M.; Orton, David C.; Hufthammer, Anne Karin; Barrett, James Harold; Star, Bastiaan (Journal article; Peer reviewed, 2024)Small pelagic fish support profitable fisheries and are important for food security around the world. Yet, their sustainable management can be hindered by the indiscriminate impacts of simultaneous exploitation of fish ... -
Population dynamics of Baltic herring since the Viking Age revealed by ancient DNA and genomics
Atmore, Lane Margaret; Martinez Garcia, Lourdes; Makowiecki, Daniel; André, Carl; Lõugas, Lembi; Barrett, James; Star, Bastiaan (Peer reviewed; Journal article, 2022)The world’s oceans are currently facing major stressors in the form of overexploitation and anthropogenic climate change. The Baltic Sea was home to the first “industrial” fishery ∼800 y ago targeting the Baltic herring, ... -
Population structure of Dugong dugon across the Indo-Pacific revealed by historical mitogenomes
Furness, Lydia Hildebrand; Kersten, Oliver Sven; Boilard, Aurélie; Keith-Diagne, Lucy; Brito, Cristina; Barrett, James Harold; Kitchener, Andrew; Sabin, Richard; Lavery, Shane; Plön, Stephanie; Star, Bastiaan (Journal article; Peer reviewed, 2024)Sirenia, an iconic marine taxon with a tropical and subtropical worldwide distribution, face an uncertain future. All species are designated ‘Vulnerable’ to extinction by the IUCN. Nonetheless, a comprehensive understanding ... -
The preservation of ancient DNA in archaeological fish bone
Ferrari, Giada; Cuevas, Angelica; Gondek, Agata; Ballantyne, Rachel; Kersten, Oliver; Palsdottir, Albina Hulda; van der Jagt, Inge; Hufthammer, Anne Karin; Ystgaard, Ingrid; Wickler, Stephen; Bigelow, Gerald F; Harland, Jennifer; Nicholson, Rebecca; Orton, David; Clavel, Benoît; Boessenkool, Sanne; Barrett, James H; Star, Bastiaan (Journal article; Peer reviewed, 2021) -
Unlocking the potential of ancient fish DNA in the genomic era
Oosting, Tom; Star, Bastiaan; Barrett, James; Wellenreuther, Maren; Richie, Peter; Rawlence, Nicolas J. (Journal article; Peer reviewed, 2019)Fish are the most diverse group of vertebrates, fulfil important ecological functions and are of significant economic interest for aquaculture and wild fisheries. Advances in DNA extraction methods, sequencing technologies ... -
Walruses on the Dnieper: new evidence for the intercontinental trade of Greenlandic ivory in the Middle Ages
Barrett, James; Khamaiko, Natalia; Ferrari, Giada; Cuevas, Angelica; Kneale, Catherine; Hufthammer, Anne Karin; Palsdottir, Albina Hulda; Star, Bastiaan (Peer reviewed; Journal article, 2022)Mediaeval walrus hunting in Iceland and Greenland—driven by Western European demand for ivory and walrus hide ropes—has been identified as an important pre-modern example of ecological globalization. By contrast, the main ...