• Comprehensive multi-omics analysis of breast cancer reveals distinct long-term prognostic subtypes 

      Sharma, Abhibhav; Debik, Julia; Naume, Bjørn; Ohnstad, Hege Oma; Bathen, Tone Frost; Giskeødegård, Guro F.; Sahlberg, Guro Kristine Kleivi; Borgen, Elin; Børresen-Dale, Anne-Lise; Engebråten, Olav; Fritzman, Britt; Garred, Øystein; Geisler, Jürgen; Geitvik, Gry; Hofvind, Solveig Sand-Hanssen; Kristensen, Vessela N.; Kåresen, Rolf; Langerød, Anita; Lingjærde, Ole Christian; Mælandsmo, Gunhild Mari; Russnes, Hege Elisabeth Giercksky; Sauer, Torill; Skjerven, Helle; Schlichting, Ellen; Sørlie, Therese (Peer reviewed; Journal article, 2024)
      Breast cancer (BC) is a leading cause of cancer-related death worldwide. The diverse nature and heterogeneous biology of BC pose challenges for survival prediction, as patients with similar diagnoses often respond differently ...
    • Deep learning for automated scoring of immunohistochemically stained tumour tissue sections – Validation across tumour types based on patient outcomes 

      Kildal, Wanja; Cyll, Karolina Urszula; Kalsnes, Joakim; Islam, Rakibul; Julbø, Frida M.; Pradhan, Manohar; Ersvær, Elin; Shepherd, Neil; Vlatkovic, Ljiljana; Tekpli, Xavier; Garred, Øystein; Kristensen, Gunnar S Balle; Askautrud, Hanne Arenberg; Hveem, Tarjei Sveinsgjerd; Danielsen, Håvard Emil Greger; Bathen, Tone Frost; Borgen, Elin; Børresen-Dale, Anne-Lise; Engebråten, Olav; Fritzman, Britt; Hartmann-Johnsen, Olaf Johan; Geisler, Jürgen; Geitvik, Gry; Hofvind, Solveig Sand-Hanssen; Kåresen, Rolf; Langerød, Anita; Lingjærde, Ole Christian; Mælandsmo, Gunhild Mari; Naume, Bjørn; Russnes, Hege Elisabeth Giercksky; Sahlberg, Guro Kristine Kleivi; Sauer, Torill; Skjerven, Helle; Schlichting, Ellen; Sørlie, Therese (Peer reviewed; Journal article, 2024)
      We aimed to develop deep learning (DL) models to detect protein expression in immunohistochemically (IHC) stained tissue-sections, and to compare their accuracy and performance with manually scored clinically relevant ...
    • Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome 

      Aure, Miriam Ragle; Vitelli, Valeria; Jernström, Sandra Johanna; Kumar, Surendra; Krohn, Marit; Due, Eldri Undlien; Haukaas, Tonje Husby; Leivonen, Suvi-Katri; Vollan, Hans Kristian Moen; Luders, Torben; Rødland, Einar Andreas; Vaske, Charles; Zhao, Wei; Møller, Elen Kristine; Nord, Silje; Giskeødegård, Guro F.; Bathen, Tone Frost; Caldas, Carlos; Tramm, Trine; Alsner, Jan; Overgaard, Jens; Geisler, Jürgen; Bukholm, Ida Rashida Khan; Naume, Bjørn; Schlichting, Ellen; Sauer, Torill; Mills, Gordon B.; Kåresen, Rolf; Mælandsmo, Gunhild; Lingjærde, Ole Christian; Frigessi, Arnoldo; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise; Sahlberg, Kristine Kleivi; OSBREAC, Oslo Breast Cancer Consortium (Journal article; Peer reviewed, 2017)
      Background Breast cancer is a heterogeneous disease at the clinical and molecular level. In this study we integrate classifications extracted from five different molecular levels in order to identify integrated ...
    • LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer 

      Sas-Chen, Aldema; Aure, Miriam Ragle; Leibovich, Limor; Carvalho, Silvia; Enuka, Yehoshua; Körner, Cindy; Polycarpou-Schwarz, Maria; Lavi, Sara; Nevo, Nava; Kuznetsov, Yuri; Yuan, Justin; Azuaje, Francisco; Ulitsky, Igor; Diederichs, Sven; Wiemann, Stefan; Yakhini, Zohar; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise; Yarden, Yosef; Sauer, Torill; Geisler, Jürgen; Hofvind, Solveig; Bathen, Tone Frost; Borgen, Elin; Engebråten, Olav; Fodstad, Øystein; Garred, Øystein; Geitvik, Gry; Kåresen, Rolf; Naume, Bjørn; Mælandsmo, Gunhild; Russnes, Hege Elisabeth Giercksky; Schlichting, Ellen; Sørlie, Therese; Lingjærde, Ole Christian; Sahlberg, Kristine Kleivi; Skjerven, Helle; Fritzman, Britt (Journal article; Peer reviewed, 2016)
      Long noncoding RNAs (lncRNAs) are emerging as regulators of gene expression in pathogenesis, including cancer. Recently, lncRNAs have been implicated in progression of specific subtypes of breast cancer. One aggressive, ...
    • Regjeringens «koronakommisjon» er lite representativ og har inhabil leder 

      Kåresen, Rolf; Gisvold, Sven Erik; Heier, Hans Erik (Peer reviewed; Journal article, 2020)