Browsing NTNU Open by Author "Doni Jayavelu, Naresh"
Now showing items 1-6 of 6
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Constrained Fourier estimation of short-term time-series gene expression data reduces noise and improves clustering and gene regulatory network predictions
Bar, Nadav; Nikparvar, Bahareh; Doni Jayavelu, Naresh; Roessler, Fabienne Krystin (Peer reviewed; Journal article, 2022)Background Biological data suffers from noise that is inherent in the measurements. This is particularly true for time-series gene expression measurements. Nevertheless, in order to to explore cellular dynamics, scientists ... -
Dynamisk modellering og simulering av gastrin-nettverk i kreftceller
Jevne, Ivar Magnus (Master thesis, 2013)Fordøyelseshormonet gastrin regulerer utskillelse av magesyre samt at det kontrollerer vekst og oppbygging av membranen i magesekken. Hormonet er assosiert med flere krefttyper i fordøyelsessystemet. En av nøkkelresponsene ... -
Genome scale transcriptional response diversity among ten ecotypes of Arabidopsis thaliana during heat stress
Barah, Pankaj; Doni Jayavelu, Naresh; Mundy, John; Bones, Atle M. (Journal article; Peer reviewed, 2013) -
Iterative sub-network component analysis enables reconstruction of large scale genetic networks
Doni Jayavelu, Naresh; Aasgaard, Lasse Svenkerud; Bar, Nadav (Peer reviewed; Journal article, 2015)Background:Network component analysis (NCA) became a popular tool to understand complex regulatorynetworks. The method uses high-throughput gene expression data and a priori topology to reconstruct transcriptionfactor ... -
Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line
Doni Jayavelu, Naresh; Bar, Nadav (Journal article; Peer reviewed, 2015)Background MicroRNAs (miRNAs) are small non-coding RNAs that regulate genes at the post-transcriptional level in spatiotemporal manner. Several miRNAs are identified as prognostic and diagnostic markers in many human ... -
Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses
Barah, Pankaj; Naika, BNM; Doni Jayavelu, Naresh; Sowdhamini, R; Shameer, K; Bones, Atle M. (Journal article; Peer reviewed, 2016)Differentially evolved responses to various stress conditions in plants are controlled by complex regulatory circuits of transcriptional activators, and repressors, such as transcription factors (TFs). To understand the ...