dc.contributor.author | Holmås, Stian | |
dc.contributor.author | Riudavets Puig, Rafael | |
dc.contributor.author | Acencio, Marcio Luis | |
dc.contributor.author | Mironov, Vladimir | |
dc.contributor.author | Kuiper, Martin | |
dc.date.accessioned | 2020-01-30T11:46:39Z | |
dc.date.available | 2020-01-30T11:46:39Z | |
dc.date.created | 2020-01-08T11:20:38Z | |
dc.date.issued | 2019 | |
dc.identifier.issn | 1367-4803 | |
dc.identifier.uri | http://hdl.handle.net/11250/2638840 | |
dc.description.abstract | The BioGateway App is a Cytoscape (version 3) plugin designed to provide easy query access to the BioGateway Resource Description Framework triple store, which contains functional and interaction information for proteins from several curated resources. For explorative network building, we have added a comprehensive dataset with regulatory relationships of mammalian DNA-binding transcription factors and their target genes, compiled both from curated resources and from a text mining effort. Query results are visualized using the inherent flexibility of the Cytoscape framework, and network links can be checked against curated database records or against the original publication. | nb_NO |
dc.language.iso | eng | nb_NO |
dc.publisher | Oxford University Press (OUP) | nb_NO |
dc.rights | Navngivelse 4.0 Internasjonal | * |
dc.rights.uri | http://creativecommons.org/licenses/by/4.0/deed.no | * |
dc.title | The Cytoscape BioGateway App: explorative network building from an RDF store | nb_NO |
dc.type | Journal article | nb_NO |
dc.type | Peer reviewed | nb_NO |
dc.description.version | publishedVersion | nb_NO |
dc.source.journal | Bioinformatics | nb_NO |
dc.identifier.doi | 10.1093/bioinformatics/btz835 | |
dc.identifier.cristin | 1768411 | |
dc.description.localcode | (C) The Author(s) 2019. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. | nb_NO |
cristin.unitcode | 194,66,10,0 | |
cristin.unitcode | 194,65,15,0 | |
cristin.unitname | Institutt for biologi | |
cristin.unitname | Institutt for klinisk og molekylær medisin | |
cristin.ispublished | true | |
cristin.fulltext | original | |
cristin.qualitycode | 2 | |